Summary of the Minutes of the Workshop on Biodiversity Informatics

There were 5 speakers and 10 panelists representing as many portal initiatives, participating at the venue or via WebEx, addressing an audience of 75 comprising of students, researchers, representatives from governmental bodies and technological platforms.The entire day’s sessions were peppered with questions and discussions, directed to the presenters as also within the members of the audience.

The technology session presented an Indian initiative, Bhuvan, a geospatial data alternative to GoogleEarth that was pertinent to the India centric audience. The second presentation was the Atlas of Living Australia, an international endeavor that was able to give a broad overview of how government funding for the sharing of government data on a public platform was able to source large information and present it for open access on a portal. The project aims to serve a variety of users from scientists, citizen scientists to policy makers and activists in biodiversity and conservation. The WGP was presented by a discussion of architecture and design of participation interface for recording and accumulating biodiversity observation data. The scientific commons and policy session covered a wide range of topics: the interpretation of the Indian laws for portal developments across disciplines, the governmental policies that may hinder the development of Open source platforms, the creative commons licenses and how they work for scientific data, and whether developing a biodiversity commons would help the community at large.

Global initiatives in the area of scientific commons were presented. Views from the participants on various aspects and the practicality of a legal framework were discussed. There are plans to discuss and evolve a draft of a charter for scientific commons that would be relevant for biodiversity and conservation. A clearly articulated and agreed data policy is also one of the deliverables of the project.

The third session centred on the experience of India-centric biodiversity portals. Two of the panelists presented their portals and attended the session over WebEx from the United States. A spectrum of portals was presented. Some of them were focused on single taxa, or a theme focus from medicinal plants to thematic citizen science initiatives. The IBP and WGP were presented as broad based with large collections of spatial data and species data. Perspective plans of large biodiversity portal initiatives, like the GBIF node for India, INBIF, were outlines to showing the things that may come in the next few years.

The discussions revolved around scientific rigor versus citizen participation, large-scale projects v/s small-scale focused portals, and maintaining quality with crowd sourced data. Ideas about how peer recognition and scientific status could be achieved were discussed. Focused portals closely managed by experts to provide valuate biodiversity and species data were discussed, with methods of maintaining quality and curating data. The event concluded by discussions of how each portal can maintain its identity and focus but at the same time evolve mechanisms for interoperability and exchange of information. There were open discussions on whether we can network and provide easy toolkits for building focused participation sites.

Minutes of the Workshop on Biodiversity Informatics

Objectives of the Workshop

Over the last few years, Biodiversity Informatics has emerged as a field to aggregate and consolidate biodiversity information across the world. With the increased penetration of the Internet into developing economies, and the widespread adoption of web technologies, biodiversity informatics has spawned an impressive variety of initiatives. These initiatives range from global knowledge bases and networks, national initiatives, eco-region based initiatives, as well as sharply focused initiatives which address a single species or event. There have been tangible advantages for stakeholders from these initiatives which has inspired many other endeavors. Success stories exist at both global and local level, and learning from these experiences can help one understand the multi-faceted nature of this discipline.

The Western Ghats Portal team organized a one-day workshop to explore the contemporary state of biodiversity informatics as expressed in three spheres: i) technology behind biodiversity informatics, ii) scientific commons and policy and iii) biodiversity portals in India. The workshop was intended to bring together technologists, open data policy experts, leaders of portal initiatives and user groups and stakeholders to meet and discuss experiences and approaches to Biodiversity Informatics.

Seventy five participants attended the workshop covering governmental agencies, NGO’s, academic institutes, student groups, CEPF grantees and other relevant stakeholders. There were 5 speakers and 10 panelists representing as many portal initiatives, participating at the venue or via WebEx from the continents of Australia and North America.

Plenary I: Technology behind biodiversity informatics – 0930 – 1115 hrs

This session was introduced by Dr.B.Ramesh of the French Institute of Pondicherry, who welcomed the participants of the workshop. He highlighted the growth of Biodiversity Informatics leveraging the Internet. In this emerging discipline, stressed the need to take stock of the latest developments in the area.

Development of Information System, Open Data standards, Archive and Geospatial solutions, Visualization in Bhuvan – M. Arulraj, National Remote Sensing Centre (NRSC), Indian Space Research Organization (ISRO).

Arulraj gave an overview of the Bhuvan project, ISRO’s geo-portal serving as a rich geteway to Indian earth observations. The project was launched in August 2009 and has made rapid strides since then to expose earth observation images and thematic maps on the Indian sub-continent. The Bhuvan project has multiple modules, which include 3-D and 2-D visualizations; a data archive and data download; thematic land use and land cover maps; a mobile application; and a discussion forum. The project is in active development and in beta, but is adding many features and data to the portal. In addition to data dissemination it provides a webGIS platform with the ability to do analyses and create geographical layers by users. The Bhuvan portal conforms to the national map policy while exposing spatial information and imagery through its evolving portal.

Arulraj explained the architecture of the portal and surveyed the webGIS and open source technologies that were available. A demo terminal of Bhuvan was exposed during the lunch session. During the discussions on map policy, Arulraj quoted that as per Remote Sensing Data Policy (RSDP)-2011, all satellite data of resolutions up to 1 m shall be distributed on a nondiscriminatory basis and on “as requested basis” by NRSC/ISRO.

Architecture and design of participation interfaces – Anand Janakiraman, Western Ghats Portal

Anand Janakiram spoke about the design of participation interfaces for the Western Ghats portal. The intent was to engage with user groups on the user interfaces and usability of an observation interface, where users will be able to upload a multi-media object; provide a location for the observation; make a species call with a certain level of confidence; and provide notes and comments on the observation. The observation will be rated by the crowd. Species calls could be changed if necessary and agreed or disagreed upon.

Various rating systems were discussed. These included a 5 or ten star rating system, like movie rating systems; a multi-dimensional rating system like in Wikipedia; a “like” rating system that is used in many sites; and an expert based rating system. There was a lot of discussion on rating systems among the participants concerning the necessity of an expert based system; the wisdom of the public in identifications; a simple and easy to use rating system on the portal.

Challenges on the emerging discipline of Biodiversity Informatics – Donald Hobern, Atlas of Living Australia – Web participation.

Donald Hobern participated in the session from Australia over the Internet. His talk and presentation was viewed by the participants via two-way WebEx where he answered questions and interacted with the audience.

Donald presented the Australian Government supported multi-institutional project called the Atlas of Living Australia (ALA). The ALA is a multi-institutional project with large funding to build a comprehensive biodiversity site focused on Australia. The conceptual model for the portal is to build a platform that will aggregate biodiversity information resources from specimen records, field observations, literature, images, experts and amateurs. The information will be integrated as species pages, distributions, regional atlases, and nomenclature. Through this, the portal aims to serve a whole range of users ranging from researchers, taxonomists, land-use planners, and conservation and park managers.

Donald explained the typical specimen, field occurrence and occurrence data and how it is the data is presented via collections. He also explained the services to manage sensitive data and name services available to the public through APIs. The ALA also has rich mapping tools that help relate biodiversity to spatial parameters like rainfall, temperature and other abiotic and biotic factors.

ALA also develops user communities among various stakeholders that include resource management groups, conservation groups, ecological researchers, environmental agencies, field naturalists and taxonomy researchers. They also develop specific use cases and applications for each of these groups.

The questions and interaction session was animated, even though it was on the Internet. One of the issues raised was that the ALA seems to be building an all encompassing and comprehensive portal, without any particular focus theme or focus group. How was the planning of features and functions being done? Donald’s response was the portal team would build functions that they thought would be useful and then engage with user groups to better and fine-tune the application. They engage with user groups about functions on the portal.

The Western Ghats Portal team would like to thank Donald Hobern for his active participation in the workshop with a valued presentation on the state-of-the-art of a comprehensive biodiversity portal.

Plenary II: Scientific commons and policy – 1130 – 1300 hrs

The session was chaired by Dr. Ravi Chellam of the Madras Crocodile Bank Trust. Ravi introduced the session and the speakers. The idea was to generate discussions on data sharing policy among the participants in the context of the Indian legal framework of map policy, biodiversity act, intellectual property, scientific creative commons, and the culture and attitude of Indian scientists. Ravi suggested that the session should lead to further discussions to evolve a policy for data sharing among biodiversity and conservation researchers and to evolve a charter for the best practices among the community.

Commons in the context of Biodiversity Information – Danish Sheikh, Alternative Law Forum

Danish Sheikh from the Alternate Law Forum (ALF) discussed the creative commons and stressed that it maintains the copyright of the contributor. Creative Commons only specifies the terms of sharing the information and in today’s Internet driven world open access to information was essential. With a complex legal framework of creative commons, map policy, biodiversity act, and research interests of individuals, for sharing biodiversity data we must consider property versus propriety. The sharing of information on the portal must be seen from the non-commercial and academic nature of the information as well as the use of data for social good of conservation. Government data in the form of maps and reports should be sharable on an artistic license and they could be deployed on the portal. In the sharing of biodiversity information, there are no concrete cases of violations of laws and thus there are no examples to learn from.

Danish Sheikh had prepared a draft of declaration to be discussed and agreed upon by the community. This was to be circulated to the participants, comments solicited and a broad consensus evolved on the best practices for sharing biodiversity information. The discussions centered on the map policy and the need to carefully study the map policy and the biodiversity act from a legal perspective and arrive at a policy for the portal that will conform to the laws and acts in India.

Open data in the scientific realm – Sunil Abraham, Centre for Internet and Society

Sunil Abraham from the Center for Internet and Society (CIS) spoke on various national and international initiatives on open data in the scientific realm. National consultations and discussions have been going on towards evolving a National Data Sharing and Accessibility Policy (NDSAP) among scientists and researchers in the country. The principle of the policy is based on openness, flexibility, transparency, legal conformity, protection of intellectual property, formal responsibility, and professionalism. Based on these principles, various definitions have evolved. He stressed upon a clear articulation of non-sharable data in the negative list based upon the legal framework and Right to Information Act; restricted access data and open access data.

Sunil Abraham also discussed various international initiatives on scientific data sharing especially in the ecology and biodiversity realm. He spoke of the Eye on Earth initiative for evolving a sharing policy, the framework of the Shared European Environment Information System (SEIS) and various standards for data sharing.

Discussions were around the issues of motivations for data sharing and building social networks and peer encouragement for data sharing. He opined that there was no recipe for engaging the crowd towards building and participating on social networks and sharing information.

Sunil also suggested that the community should evolve a best practices policy document by discussions and debates among themselves. CIS should be seen as a service provider and advocate for evolving a shared policy and lobbying with government if necessary. But the biodiversity community should provide the lead in this effort and the CIS would only be advisory.

Plenary III – Biodiversity portals in India – 1400 – 1700 hrs

The session was moderated by MD Madhusudan of the Nature Conservation Foundation, Mysore. Over the last few years there has been a multitude of portals focused on aggregating and publishing biodiversity information of the Indian sub-continent. Some of these portals are focused upon a region or taxa or subject of interest and some portals address a wider canvas of issues on biodiversity and conservation. The session was focused on presentations by each of the portals, presenting the key features and focus of their portals; the experience of building and running the portals; key lessons learnt and future plans for the portal.

The response for the sessions on biodiversity was enthusiastic. Over 12 portal initiatives were presented. Some of the presentations were by participants in the United States, who run portals on India. The presentations and participation was done over WebEx sessions overcoming the challenge of different time zones.

Madhusudhan moderated the session, keeping focus, and allowing time for discussions and debates.

V.B Mathur, Indian Biodiversity Information Facility (InBIF)

VB Mathur presented plans for a GBIF node to be set up in India at the Wildlife Institute of India called Indian Biodiversity Facility (InBIF). The project is just being initiated and is conceived as a broad and participative initiative to address the challenges to conservation in the 21st century India. With a growing economy, the objective is to provide biodiversity information to build sustainable development for larger and inclusive populations of India. The InBIF has developed a vision and mission statement and will produce a concept paper by a consultative process by next year 2012. InBIF recognizes that such an inclusive biodiversity portal will require significant funding and the involvement of already present biodiversity portals. InBIF proposes to seek substantial funding based on the concept paper via the 12th Five-Year-Plan period starting 2012-2013.

Suhel Quader, Season Watch (http://www.seasonwatch.in), Migrant Watch (http://www.migrantwatch.in)

Suhel Quader presented two portals Seasons Watch and Migrant Watch focused on citizen science initiatives. The Seasons Watch portal is focused on the observation and recording of seasons as revealed by trees, by their fruiting, flowering and leaf fall patterns. About 100 species are observed all over the country. Migrant Watch observes the arrival and departure of migrant bird species across the sub-continent. Both these large citizen science efforts are focused on the recording and understanding of seasons to create a base-line of data on seasons and their variations. These sites are driven by questions and hypotheses. The sites have an active citizen participation. The portals are planning to expand significantly into school networks. The data generated by citizens are freely available on the portals and it encourages others to download, explore, analyze and publish analysis on the data accumulated on the portal.

Sanjay Molur, Pterocount (http://www.pterocount.org/)

Sanjay Molur presented Pterocount a South Asian bat monitoring program. The project is aimed at creating awareness about bat conservation issues and developing data on the status of South Asian bat populations. There are about 3500 species of bats and data on the bat roosts and their populations is collected through online portals as well as offline forms. The information from all these sites will be compiled and analyzed for trends in the population of bats, to identify key threats to roosts and to provide recommendations for their conservation. The data collected is contributed to the IUCN and is shared with other researchers under creative commons licenses. The study is currently focused on a single bat species Pteropus giganteus, but plans to expand to other bat species as well.

Suma Tagadur, Foundation for Revitalisation of Local Health Traditions (http://envis.frlht.org)

Sathya Sangeetha presented the medicinal plants’ envis site maintained by the Foundation for Revitalisation of Local Health Traditions. The site is focused on the development of a database for medicinal plants with details of taxonomy, local names, status, distribution and trade. The site undertakes a systematic update for 12 medicinal plants per year. They also study the conservation status of medicinal plants and help in the identification of a plant red list. They have plans to develop a children’s portal for increasing awareness of medicinal plants among children. With a focused agenda, the site has a specific and valuable role in biodiversity and conservation of India.

Ramesh BR – Western Ghats Portal (http://www.thewesternghats.in/)

BR Ramesh presented the Western Ghats Portal. This is a relatively young initiative launched about six months ago building on the India Biodiversity Portal. The focus of the portal is to collect biodiversity and conservation information on the Western Ghats, a biodiversity hotspot. The portal has a map module, a species pages module, a collaborative module and integrative theme pages. The portal has aggregated significant available data on the Western Ghats and deployed it on the portal. The portal plans to add an observation recording interface and campaign for large scale participation on the portal, and species identification keys.

Shwetank Verma, Biodiversity of India, formerly Project Brahma (http://www.biodiversityofindia.org)

Shwetank Verma presented the Biodiversity of India Portal. The portal is developed and managed completely by voluntary effort, and is aimed at being a wiki resource on the biodiversity of India. The site aggregates data on Indian biodiversity from various public sites and presents it attractively on the portal. It has an effective search engine LigerCat that helps index all information on the portal. It aims to add and enrich information on the human and cultural aspects of species and their uses. The portal is keen on networking and sharing information with other biodiversity sites by building necessary APIs for interactions between various biodiversity sites.

Krushnamegh Kunte, ifoundbutterflies (http://ifoundbutterflies.org/) web participation

Krushnamegh Kunte presented the ifoundbutterfiles portal over a WebEx session from the United States. ifoundbutterflies is a community site on the butterflies of India. It contains information on species pages, life cycle pages, photographs, and identification keys of over 600 species of butterflies in India. All information is carefully peer review and curated a team of biologists studying and researching butterflies. The data is assuredly authenticated and verified and will form a reliable source of butterfly information on India.

Vijay Barve, DiversityIndia (http://diversityindia.org/) web participation

Vijay Barve presented the DiversityIndia, a social network group over a WebEx session from the United States. The effort started off as a yahoo group and then moved to facebook as a more convenient platform to share information on the biodiversity of India. It plans to aggregate the information posted in these groups into a site that will maintain and develop biodiversity databases. The group is open to sharing information and resources with other portals working on the biodiversity of India.

Deepak Menon, India Water Portal (http://www.indiawaterportal.org/)

Samuel Rajkumar presented the India Water Portal. Their portal is supported by campaigning for participation and awareness among various fora on water resources. The features include a question bank and an interaction with experts on water; a data repository on water; and a children’s section. The portal is currently working on a data project aimed at accumulating a large repository of water related data on the portal for open access. The portal intends on expanding with a map component and a data visualization module.

Chitra Ravi, India Biodiversity Portal (http://indiabiodiversity.org/)

Chitra Ravi presented the India Biodiversity Portal. The portal was started in 2008 after the first phase of portal development. Over the past year, the portal has been enriched with checklists and species pages. The portal is closely integrated with the Western Ghats Portal sharing the platform, its features and the data. A comparison of the availability of data in EOL showed that for the lesser known flora and fauna, there is very little information publicly available. The portal expects to fill this gap, by generating rich species and distribution content for Indian species.

M.D. Madhusudhan, Status of Golden Jackals in India

MD Madhusudhan presented a focused and time-based project on the Golden Jackals on India. The site campaigned and crowd sourced on the current and historical occurrence of the golden jackal in India. The enthusiasm for participation was evident with large data collection. The data was analyzed and made available publicly and freely to whoever wanted to use the data. There was a need felt for a generic portal to support such focused time-based crowd sourcing and citizen science efforts.

K.Sankara Rao, Centre for Ecological Sciences, IISc

K Sankara Rao, presented the Center for Ecological Sciences’ creation of a virtual herbarium database from the rich herbarium available at the Institute. The herbarium is Father Saldhana’s collection on the flora of Karnataka and has the best representation of plant specimens of Karnataka. The effort to digitize the herbarium is a passionate project that will make the herbarium resources to be more widely available. Sankara Rao requested volunteers to come forward and work on the project.

Discussions and summary of the day:

The discussions centered on a range of topics and concerns for Biodiversity Informatics in India. They focused on the following themes:

Large and comprehensive portals versus narrow and focused portals. While focused portals seem efficient in achieving their objectives, large portals are trying to explore different mechanisms of harnessing and disseminating information. While such large and comprehensive portals are necessary, they will require larger efforts, longer periods and significant funding to deliver useful content in biodiversity.

Participation and Quality. There were different views on crowd sourcing information and validation mechanisms. The importance of expert-driven efforts on ensuring quality was appreciated, while there was recognition that amateur naturalists and hobbyists could be very knowledgeable and reliable.

The scientific status of a portal can be enhanced with careful expert driven peer review mechanism. Portals could also serve as repositories for data papers publications and citations that would be valued by the scientific community. Target users for the portal. Discussions on target users for the portal covered the whole spectrum from specialists and scientists to activists and concerned citizens. A biodiversity portal was expected to provide information to a variety of users and stakeholders, including managers and policy makers.

Data exchange between portals: There was a general consensus on the interaction and exchange of data among portals. This was heartening to note, but since all the portals are new and evolving, mechanisms of exchange and building APIs for exchange was lower in priority for most portals. However, all portals were open to sharing information. Many of the citizen science portals have made their data public and downloadable.

There were discussions on larger projects like the WGP to engage in technology facilitation for various citizen science projects. This was discussed and opportunities for such technology facilitation need to be explored.

Various mechanisms, such as quiz competitions, interaction with experts, bio-blitzes, campaigns and road shows; to involve and engage citizens on the portal were discussed. There were open-ended discussions on how each portal can maintain its identity and focus, but at the same time evolve mechanisms for interoperability and exchange of information, and on whether we can network and provide easy tool kits for building focused participation sites.

Dr. Prabhakar, concluded the event with a thank you note and by expressing hope that the biodiversity conservation community can build together on the momentum the workshop has created.

List of participants present at the Workshop on Biodiversity Informatics, 25th November, 2011, ATREE, Bangalore

Also see Western Ghats Portal: Workshop on Biodiversity Informatics